So, the boards are assembled and things are looking good. Unfortunately the idea of just hijacking the USB-C +5V from the Brook UFB did not work at all. However, removing the jumper connecting the +5V from the input board and connecting both to USB ports solved that issue. I don't like it, but it'll get the job done for now. However, everything else worked perfectly.
- Brook UFB USB-C conversion worked perfectly. The UFB now turns on exactly when the input board tells it to without issue.
- All of the inputs verified as good so switching modes and such on the UFB work perfectly.
- P-channel MOSFETs are awesome.