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#variantcalling

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Molecular Biology & Evolution<p>New graph-based tool ska lo enables reference-free detection of SNPs, indels, and variant groups from pathogen WGS data. Benchmarking shows high sensitivity, including in regions with dense mutations.</p><p>Link: <a href="https://doi.org/10.1093/molbev/msaf077" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">doi.org/10.1093/molbev/msaf077</span><span class="invisible"></span></a></p><p><a href="https://ecoevo.social/tags/NewPaperAlert" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NewPaperAlert</span></a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://ecoevo.social/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://ecoevo.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a></p>
nf-core<p>Pipeline release! nf-core/rnavar v1.1.0 - nf-core/rnavar 1.1.0 - Mighty Milano!</p><p>Please see the changelog: <a href="https://github.com/nf-core/rnavar/releases/tag/1.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/rnavar/rele</span><span class="invisible">ases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/gatk4" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gatk4</span></a> <a href="https://mstdn.science/tags/rna" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rna</span></a> <a href="https://mstdn.science/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/worflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>worflow</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/variantbenchmarking v1.2.0 - 1.2.0 Doubtful Adams!</p><p>Please see the changelog: <a href="https://github.com/nf-core/variantbenchmarking/releases/tag/1.2.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/variantbenc</span><span class="invisible">hmarking/releases/tag/1.2.0</span></a></p><p><a href="https://mstdn.science/tags/benchmark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>benchmark</span></a> <a href="https://mstdn.science/tags/draft" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>draft</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
GHGA<p>Want to improve your genomic variant calling pipeline? Join our webinar to learn about ncbench, a powerful benchmarking tool. We'll also cover other essential genomic benchmarking topics. Register for free: <a href="https://t1p.de/o4al3" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t1p.de/o4al3</span><span class="invisible"></span></a> 🧬🔬 <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://genomic.social/tags/ncbench" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ncbench</span></a></p>
nf-core<p>Pipeline release! nf-core/variantbenchmarking v1.1.0 - 1.1.0 Dark Murakami!</p><p>Please see the changelog: <a href="https://github.com/nf-core/variantbenchmarking/releases/tag/1.1.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/variantbenc</span><span class="invisible">hmarking/releases/tag/1.1.0</span></a></p><p><a href="https://mstdn.science/tags/benchmark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>benchmark</span></a> <a href="https://mstdn.science/tags/draft" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>draft</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/pacvar v1.0.1 - v1.0.1 - Sardine [3/6/2025]!</p><p>Please see the changelog: <a href="https://github.com/nf-core/pacvar/releases/tag/1.0.1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/pacvar/rele</span><span class="invisible">ases/tag/1.0.1</span></a></p><p><a href="https://mstdn.science/tags/alignment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alignment</span></a> <a href="https://mstdn.science/tags/longread" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>longread</span></a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pacbio</span></a> <a href="https://mstdn.science/tags/puretarget" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>puretarget</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/raredisease v2.4.0 - 2.4.0 - Vitalstatistix!</p><p>Please see the changelog: <a href="https://github.com/nf-core/raredisease/releases/tag/2.4.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/raredisease</span><span class="invisible">/releases/tag/2.4.0</span></a></p><p><a href="https://mstdn.science/tags/diagnostics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>diagnostics</span></a> <a href="https://mstdn.science/tags/raredisease" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>raredisease</span></a> <a href="https://mstdn.science/tags/snv" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>snv</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantannotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantannotation</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wes</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/variantbenchmarking v1.0.0 - Innocent Pamuk</p><p>Please see the changelog: <a href="https://github.com/nf-core/variantbenchmarking/releases/tag/1.0.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/variantbenc</span><span class="invisible">hmarking/releases/tag/1.0.0</span></a></p><p><a href="https://mstdn.science/tags/benchmark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>benchmark</span></a> <a href="https://mstdn.science/tags/draft" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>draft</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/sarek v3.5.1 - 3.5.1 - Akkatjåkkå!</p><p>Please see the changelog: <a href="https://github.com/nf-core/sarek/releases/tag/3.5.1" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/sarek/relea</span><span class="invisible">ses/tag/3.5.1</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/cancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cancer</span></a> <a href="https://mstdn.science/tags/gatk4" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gatk4</span></a> <a href="https://mstdn.science/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://mstdn.science/tags/germline" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>germline</span></a> <a href="https://mstdn.science/tags/preprocessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>preprocessing</span></a> <a href="https://mstdn.science/tags/somatic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>somatic</span></a> <a href="https://mstdn.science/tags/targetpanels" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>targetpanels</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wholeexomesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wholeexomesequencing</span></a> <a href="https://mstdn.science/tags/wholegenomesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wholegenomesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/raredisease v2.3.0 - 2.3.0 - Getafix!</p><p>Please see the changelog: <a href="https://github.com/nf-core/raredisease/releases/tag/2.3.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/raredisease</span><span class="invisible">/releases/tag/2.3.0</span></a></p><p><a href="https://mstdn.science/tags/diagnostics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>diagnostics</span></a> <a href="https://mstdn.science/tags/raredisease" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>raredisease</span></a> <a href="https://mstdn.science/tags/snv" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>snv</span></a> <a href="https://mstdn.science/tags/structuralvariants" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>structuralvariants</span></a> <a href="https://mstdn.science/tags/variantannotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantannotation</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wes</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/pacvar vv1.0.0 - nf-core/pacvarv1.0.0 - Goldfish [2/05/2024]!</p><p>Please see the changelog: <a href="https://github.com/nf-core/pacvar/releases/tag/v1.0.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/pacvar/rele</span><span class="invisible">ases/tag/v1.0.0</span></a></p><p><a href="https://mstdn.science/tags/alignment" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>alignment</span></a> <a href="https://mstdn.science/tags/longread" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>longread</span></a> <a href="https://mstdn.science/tags/pacbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pacbio</span></a> <a href="https://mstdn.science/tags/puretarget" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>puretarget</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wgs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wgs</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
nf-core<p>Pipeline release! nf-core/sarek v3.5.0 - 3.5.0 - Áhkájiegna!</p><p>Please see the changelog: <a href="https://github.com/nf-core/sarek/releases/tag/3.5.0" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">github.com/nf-core/sarek/relea</span><span class="invisible">ses/tag/3.5.0</span></a></p><p><a href="https://mstdn.science/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>annotation</span></a> <a href="https://mstdn.science/tags/cancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cancer</span></a> <a href="https://mstdn.science/tags/gatk4" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gatk4</span></a> <a href="https://mstdn.science/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://mstdn.science/tags/germline" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>germline</span></a> <a href="https://mstdn.science/tags/preprocessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>preprocessing</span></a> <a href="https://mstdn.science/tags/somatic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>somatic</span></a> <a href="https://mstdn.science/tags/targetpanels" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>targetpanels</span></a> <a href="https://mstdn.science/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://mstdn.science/tags/wholeexomesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wholeexomesequencing</span></a> <a href="https://mstdn.science/tags/wholegenomesequencing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>wholegenomesequencing</span></a> <a href="https://mstdn.science/tags/nfcore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nfcore</span></a> <a href="https://mstdn.science/tags/openscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>openscience</span></a> <a href="https://mstdn.science/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a> <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a></p>
GHGA<p>Want to improve your genomic variant calling pipeline? Join our webinar to learn about ncbench, a powerful benchmarking tool. We'll also cover other essential genomic benchmarking topics. Register for free: <a href="https://t1p.de/iz7ob" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="">t1p.de/iz7ob</span><span class="invisible"></span></a> 🧬🔬 <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/variantcalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>variantcalling</span></a> <a href="https://genomic.social/tags/ncbench" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ncbench</span></a></p>
Nikos Tsardakas Renhuldt<p>How do y'all handle primary and alternate <a href="https://scholar.social/tags/genome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genome</span></a> <a href="https://scholar.social/tags/assemblies" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>assemblies</span></a> for downstream analyses? What do you do about <a href="https://scholar.social/tags/annotation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>annotation</span></a>, <a href="https://scholar.social/tags/VariantCalling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>VariantCalling</span></a> etc? What best practices are there?</p><p><a href="https://scholar.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://scholar.social/tags/GenomeAssembly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>GenomeAssembly</span></a></p>
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