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#reproducible

0 posts0 participants0 posts today
Leonardo Lenoci ✅

#Reproducible #Research
nature.com/articles/s41597-022
I bet a lot of researchers have never heard about functional package managers and schools don't teach them either. But it is never too late to learn something new.
#FreeSoftware #GNU #Guix #NixOS #openscience

NatureToward practical transparent verifiable and long-term reproducible research using Guix - Scientific DataReproducibility crisis urge scientists to promote transparency which allows peers to draw same conclusions after performing identical steps from hypothesis to results. Growing resources are developed to open the access to methods, data and source codes. Still, the computational environment, an interface between data and source code running analyses, is not addressed. Environments are usually described with software and library names associated with version labels or provided as an opaque container image. This is not enough to describe the complexity of the dependencies on which they rely to operate on. We describe this issue and illustrate how open tools like Guix can be used by any scientist to share their environment and allow peers to reproduce it. Some steps of research might not be fully reproducible, but at least, transparency for computation is technically addressable. These tools should be considered by scientists willing to promote transparency and open science.
Johannes Rainer

We just added a #reproducible example for large-scale #metabolomics data preprocessing using the @bioconductor #xcms package to @phili 's #Metabonaut tutorials resource! 💪

rformassspectrometry.github.io

runs also on a standard 💻 - thanks to the new memory-saving processing in #xcms

using the largest (n=4000) data set from MetaboLights

rformassspectrometry.github.ioLarge Scale Data Preprocessing with xcms
#rstats#teammassspec
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F-Droid

We are celebrating 10 years of #reproducible builds in #FDroid this year, and we are overhauling the way the build server works.

Thanks to the funding from #NLnet, #NGI #NGI0 part of #HorizonEurope, and your donations, our work is intended to power the future of #FDroid for the next ten and more.

Dig deeper for the why and the how in this 15 mins post: f-droid.org/2025/05/21/making-

f-droid.orgMaking reproducible builds visible | F-Droid - Free and Open Source Android App RepositoryOur lives are moving into the digital realm, our private data flows throughall sorts of software. As software controls more and more of our lives, itis becom...
Replied in thread
gary

re: Release notes for v25.04.1 of Malcolm, a powerful, easily deployable network traffic analysis tool suite for network security monitoring

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RecurringBloatware

Oldest Guix issue (I think?): issues.guix.gnu.org/17150

I think I've come across this issue (this I can not confirm, nor deny - maybe another issue?) - although quite random, it can be fixed by re-building - which is unfortunately, so time-consuming 😞.

Sometimes (and randomly), Guix fails to check the hash, and continues with the previous version.

This can be also resolved only by corrupting the hash (ahem, replace a character with any other).

issues.guix.gnu.orgStale bootstrap/*/guile-2.0.9.tar.xz files are not detected
#guix#guile#reproducible
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