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Dennis Alexis Valin Dittrich

19 ways of looking at #dataScience at the #singularity statmodeling.stat.columbia.edu
"The emergence of frictionless #reproducibility flows from three data science principles that matured together after decades of work by many technologists and numerous research communities. The mature principles involve #dataSharing, #codeSharing, and competitive challenges, however implemented in the particularly strong form of frictionless open services."

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Marcel LaFlamme

"The growing use of Git hosting platforms in scholarly publications points to an urgent need for dedicated efforts to archive their holdings in order to preserve research code." #OpenScience #CodeSharing arxiv.org/abs/2208.04895

arXiv.orgThe Rise of GitHub in Scholarly PublicationsThe definition of scholarly content has expanded to include the data and source code that contribute to a publication. While major archiving efforts to preserve conventional scholarly content, typically in PDFs (e.g., LOCKSS, CLOCKSS, Portico), are underway, no analogous effort has yet emerged to preserve the data and code referenced in those PDFs, particularly the scholarly code hosted online on Git Hosting Platforms (GHPs). Similarly, the Software Heritage Foundation is working to archive public source code, but there is value in archiving the issue threads, pull requests, and wikis that provide important context to the code while maintaining their original URLs. In current implementations, source code and its ephemera are not preserved, which presents a problem for scholarly projects where reproducibility matters. To understand and quantify the scope of this issue, we analyzed the use of GHP URIs in the arXiv and PMC corpora from January 2007 to December 2021. In total, there were 253,590 URIs to GitHub, SourceForge, Bitbucket, and GitLab repositories across the 2.66 million publications in the corpora. We found that GitHub, GitLab, SourceForge, and Bitbucket were collectively linked to 160 times in 2007 and 76,746 times in 2021. In 2021, one out of five publications in the arXiv corpus included a URI to GitHub. The complexity of GHPs like GitHub is not amenable to conventional Web archiving techniques. Therefore, the growing use of GHPs in scholarly publications points to an urgent and growing need for dedicated efforts to archive their holdings in order to preserve research code and its scholarly ephemera.
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