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Beth Cimini 🔬💻📊If, hypothetically, a person were trying to set up a career panel series for bioimage analysis, what kinds of roles (or specific people) would you want to hear more about? Hypothetical nominations of all stripes welcome :) <a class="hashtag" href="https://bsky.app/search?q=%23bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a>

Albert Cardona<a href="https://mathstodon.xyz/@NadiaHalidi" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@NadiaHalidi</a> Workshop on True Image Deconvolution, Restoration, and AnalysisWhen: March 13th, 2025 – 3 days from now.2 hours long: 14:30 - 16:30 CETWhere: online, via zoom.Program: <a href="https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.crg.eu/en/event/workshop-true-image-deconvolution-restoration-and-analysis</a>Registration: <a href="https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://apps.crg.es/content/internet/events/webforms/workshop-true-image-deconvolution-restoration-and-analysis</a><a href="https://mathstodon.xyz/tags/BioimageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageAnalysis</a> <a href="https://mathstodon.xyz/tags/PSF" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PSF</a> <a href="https://mathstodon.xyz/tags/deconvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#deconvolution</a> <a href="https://mathstodon.xyz/tags/ImageProcessing" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageProcessing</a> <a href="https://mathstodon.xyz/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a>

Beth Cimini 🔬💻📊We're once again hiring a summer (+?) <a class="hashtag" href="https://bsky.app/search?q=%23bioimage" rel="nofollow noopener noreferrer" target="_blank">#bioimage</a> <a class="hashtag" href="https://bsky.app/search?q=%23bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a class="hashtag" href="https://bsky.app/search?q=%23software" rel="nofollow noopener noreferrer" target="_blank">#software</a> intern! Due to requirements of the funding program, you must be a current student, as well as work onsite in MA (+ have US work permission). Details at the link below. Spend your summer making great tools with fun people! <a href="https://forum.image.sc/t/software-engineering-intern-summer-fall-2025-cambridge-ma-usa/109720" rel="nofollow noopener noreferrer" target="_blank">Software engineering intern - ...</a>

EMBL EventsIs your current biological image analysis producing inaccurate results? Apply for <a href="https://mastodon.online/tags/EMBOBioImage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EMBOBioImage</a> and fix that! 🔬✨ Learn theoretical advancements and the practical skills to apply them.📩 Apply by 4 June 🗓️ 14 – 19 September 📍 EMBL Heidelberg and Virtual ➡️ <a href="https://s.embl.org/bia25-01-ma" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://s.embl.org/bia25-01-ma</a><a href="https://mastodon.online/tags/EMBLEvents" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EMBLEvents</a> <a href="https://mastodon.online/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a href="https://mastodon.online/tags/spatialstatistics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#spatialstatistics</a> <a href="https://mastodon.online/tags/artificialintelligence" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#artificialintelligence</a> <a href="https://mastodon.online/tags/computervision" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computervision</a> <a href="https://mastodon.online/tags/microscopydata" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopydata</a>

FocalPlaneOur <a href="https://biologists.social/tags/preprint" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#preprint</a> list is now up on FocalPlane. This week we focus on research in <a href="https://biologists.social/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a>. Drop us a message if we’re missing any preprints that you’ve been reading or writing! <a href="https://focalplane.biologists.com/2024/11/29/microscopy-preprints-bioimage-analysis-7/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://focalplane.biologists.com/2024/11/29/microscopy-preprints-bioimage-analysis-7/</a>

FocalPlaneIf you would like to attend a <a href="https://biologists.social/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> or <a href="https://biologists.social/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> training course in the next ~6 months but don’t have funding, check out our JCS-FocalPlane training grants to see if you are eligible. Next deadline: 22 November 2024<a href="https://www.biologists.com/grants/jcs-focalplane-training-grants/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biologists.com/grants/jcs-focalplane-training-grants/</a>

Beth Cimini 🔬💻📊Nice shout-out to <a href="https://bsky.brid.gy/hashtag/opensource" rel="nofollow noopener noreferrer" target="_blank">#opensource</a> <a href="https://bsky.brid.gy/hashtag/microscopy" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> and <a href="https://bsky.brid.gy/hashtag/imageanalysis" rel="nofollow noopener noreferrer" target="_blank">#imageanalysis</a> <a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> software at <a href="https://bsky.brid.gy/hashtag/CZIImaging" rel="nofollow noopener noreferrer" target="_blank">#CZIImaging</a> <a href="https://bsky.brid.gy/hashtag/ImagingTheFuture" rel="nofollow noopener noreferrer" target="_blank">#ImagingTheFuture</a>.

Beth Cimini 🔬💻📊Need a 5-15 minute break from doomscrolling? (You know you do!) Take 5 minutes and tell us how to make <a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a href="https://bsky.brid.gy/hashtag/imageanalysis" rel="nofollow noopener noreferrer" target="_blank">#imageanalysis</a> better! RE: <a href="https://bsky.app/profile/did:plc:o7tynxmyxsuhoeknkm7r2dul/post/3l6z5bxyc7o25" rel="nofollow noopener noreferrer" target="_blank">https://bsky.app/profile/did:plc:o7tynxmyxsuhoeknkm7r2dul/post/3l6z5bxyc7o25</a>

Beth Cimini 🔬💻📊Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite <a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> tools or find your next favorite! <a href="https://i2kconference.org/virtual" rel="nofollow noopener noreferrer" target="_blank">i2kconference.org/virtual</a> Please also help our community improve by filling out our survey - <a href="https://forum.image.sc/t/2024-image-analysis-survey/103634" rel="nofollow noopener noreferrer" target="_blank">forum.image.sc/t/2024-image...</a>

Beth Cimini 🔬💻📊Have you ever analyzed a <a href="https://bsky.brid.gy/hashtag/microscope" rel="nofollow noopener noreferrer" target="_blank">#microscope</a> image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! <a href="https://bsky.brid.gy/hashtag/microscopy" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> <a href="https://bsky.brid.gy/hashtag/imageanalysis" rel="nofollow noopener noreferrer" target="_blank">#imageanalysis</a> <a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a href="https://forum.image.sc/t/2024-image-analysis-survey/103634" rel="nofollow noopener noreferrer" target="_blank">forum.image.sc/t/2024-image...</a> <a href="https://forum.image.sc/t/2024-image-analysis-survey/103634" rel="nofollow noopener noreferrer" target="_blank">2024 Image Analysis Survey</a>

Beth Cimini 🔬💻📊<a href="https://bsky.brid.gy/hashtag/bioimageanalysis" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> friends, the deadline to submit your tutorial to the FREE Virtual I2K meeting is tomorrow- head over to <a href="https://www.i2kconference.org/virtual" rel="nofollow noopener noreferrer" target="_blank">www.i2kconference.org/virtual</a> to learn more. Help learners all over the world discover your tool or workflow! Please repost and spread the word for trainers and learners both!

Robert Haase<a href="https://mastodon.social/tags/preprint" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#preprint</a> alert 🚨 Can Large Language Models solve common <a href="https://mastodon.social/tags/BioImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioImageAnalysis</a> coding tasks? And which <a href="https://mastodon.social/tags/LLM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#LLM</a> performs best? 🙃🤓 Great collaboration with Christian Tischer, Jean-Karim Hériché and Nico Scherf 🔬🖥️🅰️ℹ️🤝🚀 <a href="https://www.biorxiv.org/content/10.1101/2024.04.19.590278v3" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2024.04.19.590278v3</a>

Moritz NegwerThis 3D image stack deconvolution tool looks super useful for <a href="https://mstdn.science/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images Wernersson et al., Nature Methods 2024 <a href="https://doi.org/10.1038/s41592-024-02294-7" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1038/s41592-024-02294-7</a>Github: <a href="https://github.com/elgw/deconwolf/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/elgw/deconwolf/</a> Program: <a href="https://deconwolf.fht.org/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://deconwolf.fht.org/</a><a href="https://mstdn.science/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> <a href="https://mstdn.science/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageAnalysis</a> <a href="https://mstdn.science/tags/deconvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#deconvolution</a>

Beth CiminiFresh out on biorxiv - me getting to brag about the stupendous, brilliant, AMAZING folks who have been kind enough to come hang out with us at the <a href="https://fediscience.org/tags/broadinstitute" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#broadinstitute</a> to do our Postdoctoral Training Program in <a href="https://fediscience.org/tags/BioimageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageAnalysis</a> . Into the🧵 for story! <a href="https://www.biorxiv.org/content/10.1101/2024.05.13.593910v1" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2024.05.13.593910v1</a>

Juan Nunez-IglesiasAs academic <a href="https://fosstodon.org/tags/BioImageAnalysis" class="mention hashtag" rel="tag">#BioImageAnalysis</a> jobs in Australia go, this one is pretty good: Microscopy Platform Applications Specialist at UniMelb Biological Optical Microscopy Platform.<a href="https://jobs.unimelb.edu.au/caw/en/job/916889" target="_blank" rel="nofollow noopener noreferrer" translate="no">https://jobs.unimelb.edu.au/caw/en/job/916889</a>The BOMP team is very nice, and continuing positions are really hard to find in Oz right now. (I do not have one.) Advertised at Academic Level A (geared at someone recently out of PhD).<a href="https://fosstodon.org/tags/GetFediHired" class="mention hashtag" rel="tag">#GetFediHired</a>

Beth CiminiFirst, from me - an invited short review in Journal of <a href="https://fediscience.org/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Microscopy</a> about general strategies to how you actually sit down and solve image analysis <a href="https://fediscience.org/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> problems efficiently and effectively. One of my favorite things I've ever written! Hope it helps. <a href="https://doi.org/10.1111/jmi.13288" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://doi.org/10.1111/jmi.13288</a> (2/3)

FocalPlaneIn our interview with Estibaliz Gómez de Mariscal we chat about Esti’s career path, the art of collaborations and <a href="https://biologists.social/tags/DL4MicEverywhere" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DL4MicEverywhere</a>, a project that Esti co-leads with <a href="https://mas.to/@HenriquesLab" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@HenriquesLab</a> and <a href="https://mastodon.online/@guijacquemet" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@guijacquemet</a>. <a href="https://focalplane.biologists.com/2024/02/27/an-interview-with-estibaliz-gomez-de-mariscal/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://focalplane.biologists.com/2024/02/27/an-interview-with-estibaliz-gomez-de-mariscal/</a> <a href="https://biologists.social/tags/bioimageanalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageanalysis</a> <a href="https://biologists.social/tags/deeplearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#deeplearning</a> <a href="https://biologists.social/tags/collaboration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#collaboration</a>

Rachel Lee, PhD🔬 🚨 Just 1 week left to apply to <a href="https://mstdn.science/tags/IALSJanelia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#IALSJanelia</a>, <a href="https://mstdn.science/@AICjanelia" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@AICjanelia</a> 's two-week long <a href="https://mstdn.science/tags/microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microscopy</a> bootcamp covering everything from <a href="https://mstdn.science/tags/experimentalDesign" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#experimentalDesign</a> to <a href="https://mstdn.science/tags/imaging" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#imaging</a> to <a href="https://mstdn.science/tags/bioimageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioimageAnalysis</a> Read more and apply by Feb 15 here: <a href="https://www.aicjanelia.org/imagingacrosslengthscales" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.aicjanelia.org/imagingacrosslengthscales</a>

Fabrizio MusacchioIn May, there is a course on <a href="https://sigmoid.social/tags/DeepLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#DeepLearning</a> for <a href="https://sigmoid.social/tags/Microscopy" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Microscopy</a> <a href="https://sigmoid.social/tags/ImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ImageAnalysis</a> (EMBO-DL4MIA) by <a href="https://sigmoid.social/tags/EMBO" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EMBO</a>. 🌍 <a href="https://humantechnopole.it/en/trainings/deep-learning-for-microscopy-image-analysis-embo-dl4mia/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://humantechnopole.it/en/trainings/deep-learning-for-microscopy-image-analysis-embo-dl4mia/</a> 📍Human Technopole, Milan, Italy, In presence 📆 Date: 08/05/2024 - 16/05/2024 ⏰ Registration Deadline: 04/02/2024<a href="https://sigmoid.social/tags/neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#neuroscience</a> <a href="https://sigmoid.social/tags/BioimageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioimageAnalysis</a>

Robert HaaseI made a <a href="https://mastodon.social/tags/BioImageAnalysis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BioImageAnalysis</a> <a href="https://mastodon.social/tags/GPT" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GPT</a> 🎉Compared to <a href="https://mastodon.social/tags/ChatGPT" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ChatGPT</a> it provides more concise hints and knows more about some Python libraries my collaborators and yours truly maintain. Thanks to all contributors and as always: Feedback is 💚ly welcome 🤗<a href="https://chat.openai.com/g/g-psAohb1OY-bio-image-analysis-gpt" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://chat.openai.com/g/g-psAohb1OY-bio-image-analysis-gpt</a>

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