Pipeline release! nf-core/scnanoseq v1.2.0 - nf-core/scnanoseq v1.2.0 - Copper Rhinoceros!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.2.0

Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.1.0

Pipeline release! nf-core/scrnaseq v4.0.0 - 4.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/4.0.0

Pipeline release! nf-core/scrnaseq v3.0.0 - 3.0.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/3.0.0

Pipeline release! nf-core/scnanoseq v1.0.0 - nf-core/scnanoseq v1.0.0 - Titanium Toad!

Please see the changelog: https://github.com/nf-core/scnanoseq/releases/tag/1.0.0

#10xgenomics #long-read-sequencing #nanopore #scrna-seq #single-cell #nfcore #openscience #nextflow #bioinformatics

Pipeline release! nf-core/scrnaseq v2.7.1 - 2.7.1!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.1

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Thinking about taking a job setting up pipelines for 10x Xenium spatial sequencing data. Anyone out there in the fediverse have experience or good resources to help me get a sense of what I’d be dealing with? #bioinformatics #Spatial #10xgenomics #genomics

Pipeline release! nf-core/scrnaseq v2.7.0 - 2.7.0!

Please see the changelog: https://github.com/nf-core/scrnaseq/releases/tag/2.7.0

#10x-genomics #10xgenomics #alevin #bustools #cellranger #kallisto #rna-seq #single-cell #star-solo #nfcore #openscience #nextflow #bioinformatics

Xenium + Visium + scRNA-seq on the adjacent sections to study breast cancer #10xgenomics
https://www.nature.com/articles/s41467-023-43458-x

I'm very happy to announce that MultiQC v1.15 was just released!

https://github.com/ewels/MultiQC/releases/tag/v1.15

It comes with fixes for #10xGenomics #CellRanger fix, #mosdepth tweaks, and supports a new tool #Librarian to predict library type from FastQ base composition plus much more!

Also included is a ~5-7 fold speed-up in the initial file search. This will shave off a chunk of run-time off for people generating big reports

Thanks to Vlad Savelyev for this with a hat tip to Pontus Höjer at the end

Karius raises $165 million for its liquid biopsy technology identifying diseases in a drop of blood - “What Karius is good at is identifying those novel microbes before they become an outbreak like coro... more: http://feedproxy.google.com/~r/Techcrunch/~3/xdhvzgcV1Eo/ #lightspeedventurepartners #generalcatalyst #machinelearning #managingpartner #guardanthealth #khoslaventures #biotechnology #softbankgroup #lifesciences #10xgenomics #visionfund #companies #infection #bacteria #virus

$125 million for Inscripta may usher in the next wave of genetic engineering - In these waning days of the second decade of the twenty-first century, technologists and investors a... more: http://feedproxy.google.com/~r/Techcrunch/~3/CroLQry2iyM/ #universityofcalifornia #emerging-technologies #jscapitalmanagement #paladincapitalgroup #geneticengineering #quantumcomputing #machinelearning #broadinstitute #biotechnology #manufacturing #lifesciences #10xgenomics #california #executive #oak